ognizant Communication Corporation

GENE EXPRESSION

AUTHOR AND SUBJECT INDEXES: VOLUMES 10 & 11


VOLUME 11
Author Index
Ai, R., 35
Alejo Blanco, A. R., 1
Alioto, T., 263

Bagchi, D., 251
Bagchi, M., 251
Baker, R. T., 163
Banasik, M., 117, 263, 271
Banerjee, A. K., 241
Baybutt, H., 1
Bhattacharyya, D., 149
Bose, S., 241
Bowen, W. C., 55
Buckland, P. R., 233

Cabrera-Luque, J.-M., 23
Calero, K., 211
Cardozo-Pelaez, F., 47, 211
Caridi, G., 95
Casellas, P., 125
Cearley, J. A., 221
Chiba, N., 77
Clinton, M., 1
Coleman, S. L., 233
Combes, T., 125
Costa, R. H., 149
Crawford, D. A., 85
Cusano, R., 95

Dangond, F., 13
Davies, K. J. A., 85
Dennewitz, M. B., 149
Detloff, P. J., 221
Divizia, M. T., 95
Dixon, K. T., 221

Ferrini, J.-B., 125

Galiegue, S., 125
Giacopelli, F., 95
Gousseva, N., 163
Gray, S. G., 13
Guy, C., 233

 Harbison, R., 211
Heimberg, H., 141
Heller, R. S., 141
Hoogendoorn, B., 233
Horvat, S., 1
Hunter, J. M., 221

Iglesias, A. H., 13

Jbilo, O., 125
Johnson, R. S., 181

Kalinichenko, V. V., 149
Katoh, M., 141
Kawamata, T., 271
Khanna, S., 251
Kinoshita, N., 271
Kitahara, J., 77
Klein, T., 141

Labhart, P., 35
Lapres, J. J., 181
Lepe, R., 149
Lewerenz, J., 105
Leypoldt, F., 105
Ling, Z., 141
Luo, J., 55

Madsen, O. D., 141
Manson, J., 1
Masliah, E., 117, 263
Matoh, N., 117
Melendez, J. A., 85
Methner, A., 105
Michalopoulos, G. K., 55
Miele, G., 1
Mosquera, D. I., 47, 211
Mulé, K., 55

Nakagawa, Y., 77
Nishimura, Y., 117

O'Donovan, M. C., 233

 Peleraux, A., 125
Persad, A. S., 263
Phillips, C., 251
Prieto-Àlamo, M.-J., 23
Pueyo, C., 23

Ravazzolo, R., 95
Rink, C., 251
Rosatto, N., 95
Roy, S., 251
Ryan, H. E., 181

Sakamoto, H., 77
Sanchez-Ramos, J., 47, 211
Sandoval, A., 35
Sava, V., 211
Sen, C. K., 251
Serup, P., 141
Smith, S. K., 233
Song, S., 211
Stedeford, T., 47, 117, 211, 263, 271
Suzuki, S., 117

Takai, D., 199
Takehashi, M., 117, 263, 271
Tanaka, S., 117, 263, 271
Teh, B. T., 13
Tsukagoshi-Nagai, H., 271

Ueda, K., 117, 263, 271

Vengellur, A., 181
Vidal, H., 125

Wang, X., 149
Wang, Y., 85
Woods, B. G., 181

Yamamoto, F., 199
Yamamoto, F., 199
Yamamoto, M., 199

Zhou, Y., 149

Subject Index

Absolute real-time PCR, 23
ACTB, 23
Actin, 241
Adaptive response, 85
b2-Adrenergic receptor, 105
Adult tissues, 199
Alternative splicing, 13
Alzheimer's disease, 263
Anticancer drugs, 125
APE1, 23
Apoptosis, 163

B3GALT5, 233
Biliary cells, 55

C/EBP-beta, 95
Cataracts, 233
b-Catenin, 241
cDNA microarray, 181
Chromatin structure, 221
CNS, 271
Cre recombinase, 221
CRYAA, 233
CYP2D6, 263

Debrisoquine hydroxylase, 117
Degenerate PCR, 105
Differential display, 77
Differentiation, 163, 271
DNA chip, 125
DNA damage, 47
DNA damage and repair, 211
DNA-dependent protein kinase, 35
DNA methylation, 35
DNA repair, 47
Down syndrome, 233

Enhancer, 95

Fibroblast, 181
Forkhead Box transcription factor, 149
FoxM1, 149
Frizzled, 141

Galactosyltransferase, 233
GAPDH, 23
Gene arrays, 55
Gene expression, 85, 141, 221
Genomics, 181
Growth regulation, 55

 Hamster fibroblasts, 85
Hepatitis C, 233
Hepatocytes, 55
Herbal, 251
Hierarchical clustering algorithm, 199
HIF1 protein, 181
Histone deacetylase, 13
HO-1, 23
Homeobox genes, 199
Hox genes, 199
Human, 141
Human parainfluenza virus type 3, 241
Hydrogen peroxide, 85
Hypertrophy, 149
Hypoxia, 181

IFNAR1, 233
Immediate early transcription factors, 149
In situ hybridization, 141
In vitro transcription, 241
In vivo gene expression, 23
Isoforms, 263

KCNJ15, 233
Knock-in, 221
Knock-out, 221

Leptin, 251
Lewy body variant of Alzheimer's disease, 263
Liver regeneration, 149

Malignant glioma cell lines, 35
Melanoma-associated antigen, 35
Mice, 23
Mitochondria, 77
Mouse brain regions, 211
MPTP, 117

NCAM2, 233
Neurodegenerative disease, 47
Neuronal differentiation, 105
Neurons, 271
NT2 cells, 105
Nuclear localization, 149
 
 
 
 

 Obesity, 251
OGG1, 23
Osteopontin, 95
Oxidative stress, 1, 23, 85, 211

Pancreas, 141
Paraquat, 23
Parkinson's disease, 117, 263
PCR, 141
Phospholipid hydroperoxide glutathione peroxidase (PHGPx), 77
Polymorphism, 263
Prion protein expression, 1
Prion protein function, 1

Rat, 251
Reactive oxygen species (ROS), 77, 117
Real-time PCR, 221
Riboregulator, 85
RNA fingerprinting, 35
Rubratoxin B, 211

Septin 3, 263
Septins, 271
Serotonin, 251
sFRP, 141
Signaling, 13
SR31747A, 125
Striatum, 47
Subtractive suppression hybridization, 105
Superoxide dismutase (SOD), 211
Superoxide radicals, 1
Systematic Multiplex RT-PCR, 199

Three-dimensional cultures, 55
Thymidine kinase, 125
Tissue-specific expression, 199
Transcription, 95
Transcriptional signature, 125

Ubiquitin, 163
Ubiquitin-specific protease, 163
UBP41, 163

Whole-mount in situ hybridization, 1
Winged helix domain, 149
Wnt, 141

VOLUME 10
Author Index
Banerjee, A. K., 93, 193
Banerjee, S., 115
Bhattacharya, R., 243
Bhattacharyya, N., 115
Brumfield, L., 165

Casellas, P., 213
Chen, H.-C., 115
Chen, X., 231
Chu, R., 165
Cinato, E., 213
Crawford, D. R., 101, 179

Dai, F., 231
Dang, A., 271
Davies, K. J. A., 101
Davison, M., 165
De, B. P., 93
Dean, D. A., 201
Dhers, C., 213

Fillmore, R. A., 201

Galiègue, S., 213
Gandhi, P., 179
Goldman, E., 109
Gupta, N. K., 93

He, H., 231
Herring, C., 165
Ho, L., 271
Howard, M. J., 279
Hurtubise, M., 255

 Intine, R. V., 41

Jbilo, O., 213
Jiang, J., 231

Kelley, K., 271
Kochheiser, J. C., 101
Krull, C. E., 295

Lim, H., 165
Lin, H. Y., 179
Loison, G., 213

Malur, A. G., 93
Mandecki, W., 109
Maraia, R. J., 41, 243
Mathur, M., 193
McLennan, R., 295
McStay, B., 263
Mehta, K. D., 153

Pasinetti, G. M., 271
Paule, M. R., 263
Péléraux, A., 213
Perumal, K., 59, 243
Picard, C., 213
Pikaard, C. S., 263
Pompl, P., 271

Qing, W., 271
Quélo, I., 255

Reddy, J. K., 165
Reddy, R., 1, 59, 243

 Salmon, S. L., 101
Sarkar, S. A., 125
Schools, G. P., 101
Schultz, M. C., 263
Sharma, R. P., 125
She, X., 231
Silve, S., 213
Singh, R., 79
Sinha, K., 243
Spitz, D. R., 179
St-Arnaud, R., 255
Suzuki, T., 179

Teplow, D., 271
Terns, M. P., 17
Terns, R. M., 17
Tschudi, C., 3

Ullu, E., 3

Wang, L., 115
Willis, I., 263
Wu, L.-C., 137
Wu, X., 279

Xiang, Z., 271

Yeldandi, A. V., 165
Yemul, S., 271
Yu, L., 231

Zemsky, J., 109
Zhang, W., 165
Zhao, S., 231
Zhao, Y., 231
Zhao, Z., 271
Zimmer, W. E., 201

Subject Index

aNAC, 255
3´ Adenylation, 59
Acyl-CoA oxidase, 165
Alternative splicing, 79
Alzheimer's disease, 271
Amyloid, 271
Androgen receptor, 201
Antiproliferative, 213
Archaea, 17
ARF/SAR1, 231
Autoantigen, 41

bHLH, 279

Cajal body, 17
Cap formation, 3
Cap 4 structure, 3
Catalase, 179
Chicken, 295
Chronic resistance, 179
c-Jun, 255
Cloning, 231
c-Myc, 125
Coactivation, 255
Combinatorial control, 79
COX-2, 271

Developmental gene regulation, 201
Differential display, 101
Differentiation, 125
DNA binding, 115
DNA chips, 213
DNA polb, 115

E. coli protein synthesis, 109
3´End formation, 59
Endothelin, 137
Enhancers, 79
Enteric nervous system, 279
EphA4, 295
Ephrin, 295
Ergosterol pathway, 213
Evolution, 137
Exon definition, 79
Expression, 231

Gap-filling synthesis, 115
Gene expression, 101
Growth control, 137
GTP binding, 193
Guidance, 295
Gut development, 279
 

 HA-1, 179
Hamster fibroblasts, 101
HAND1, 279
HAND2, 279
Hepatic cells, 153
HL-60, 179
Homologous gene clusters, 137
Human parainfluenza virus type 3 (HPIV3), 93
Human tumor cell lines, 115
Hydrogen peroxide, 101, 179

In vitro transcription, 93
Inflammation, 271
Internal initiation or reinitiation, 109

La protein, 243
LDL receptor, 153
Lhp1, 41
Liver cancer, 231

Mad, 125
Major urinary protein, 165
Mass spectrometry, 165
Max, 125
Methylphosphate cap structure, 243
Microarray, 179
Migration, 295
MNNG, 115
mRNA, 115
Murine embryonic stem cells, 125
Mutagenesis, 93

Neural crest, 279
Nk-homeodomain, 201
Nucleolus, 17, 41

Oxidative stress, 101, 179
Oxygen toxicity, 179

P protein, 193
p38MAPK, 153
p42/44MAPK, 153
Peroxisome proliferator, 165
Peroxisome proliferator-activated receptor, 165
Phosphorylation, 193
Polypyrimidine tract, 79
5´-ppp, 41
Programmed translational frameshifts, 109
Prostate cancer, 201
Protein, 115
ProteinChip Array, 165
Protein kinase C, 153
Protein structure modeling, 41
 

 RAB, 231
Readthrough of UGA codons, 109
Recoding, 109
Retinoic acid, 125
Ribosome, 17
Ribozyme, 17
RNA binding proteins, 79
RNA-dependent RNA polymerase, 93
RNA modification, 17, 41
RNA polymersae III transcription, 3
RNA processing, 17
RNA recognition motif (RRM), 41
RNA transport, 17
RNase P, 41
RNP, 17

Segmentation, 295
SELDI, 165
Separate C2H2 zinc finger pairs, 137
Serum response factor, 201
Silencers, 79
Sla1, 41
Small nuclear ribonucleoprotein, 79
Small nucleolar RNA, 17
Small RNAs, 59
Spliced leader RNA, 3
Splicing factors, 79
SR31747, 213
Sterol isomerase, 213

Telomerase, 17
TFAP2, 137
Thymocyte differentiation, 137
Tissue-specific expression, 201
TNF signaling, 137
Transcription, 41
Transcriptional activation, 255
Transcriptional regulation, 153, 201
trans-Splicing, 3
Trimethylguanosine cap, 3
tRNA genes, 3
tRNA processing, 41
Tumorigenesis, 137

3´Uridylation, 59
U-snRNAs, 3

Vesicular stomatitis virus, 193

Walker A motif, 41
Walker motif, 243

ZAS, 137